PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_EF9AFFB3D.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 740aa    MW: 82012.2 Da    PI: 5.8536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_EF9AFFB3D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.16.7e-14195273190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF +r  ks+++++ g   +++ +C + gk++   k+           r++C+a +++ +++d+ w+vt+ ++ HnH+
  Traes_5DL_EF9AFFB3D.2 195 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHA 271
                            6*********************8777.66789**********98877..........9*****************************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_5DL_EF9AFFB3D.2 272 FS 273
                            86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-9195273IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MEFSVEEEPR LSGAPLALGL GEDAMEAVRR AFPGQDFAID VVNRAFGWRN PEERSQQDSS  60
ACGISGACTS EKRVDLEQVE NAGKSCAQQD PSASEMQLRS QEAEQAGQRC DAPPAPADVG  120
AEAGGPPAPA DVGAEAGGGW NRRVRRGRIP DEREPDAQRV SALEKALTGF AERQTDVVVN  180
PTVGTCFDSI TEAYDFYNLY SWEMGFGIRY GKSRRNTKGG KCMQEITCVN AGKPNMGGKS  240
RRCECTALIR LLRTDDNGWY VTQHRKVHNH AFSTTYGNKV HWPSHKHLDK YTRDLVRQLR  300
HNNVNLGVYD TIASFFGRME NVPFNKRSIR TLCGEVIREQ ADDDARKTME TAAASGERPE  360
NHTGEETTFN CMGLASTTVG SPNMPVDPLR YPEQDDTHSN AEAGRLADLL LAFGDCHLVL  420
KSCTYDDLIN SNGTMSGLEE AVKAVTPHLQ QGIFGDLWSR AHNSGGVVSA QVLTIKDLFR  480
FTRWLTTTTG QHNLRCVQQR AKLVNSGKAV LEPEQIALLH LYQAENDEYS VKMNKLQGER  540
DAKIAHYMAK IDEARKSFEV SIQAAKQHYP VSASYVALDS NELRGQCWTM YLAQCRKEAK  600
DLNAKASNIV EKYGPEVIQR HLFEFCSQET NRQALLKYAQ TKVNKLKEAG DAREDTLHDY  660
MTLLDIEKAY ALLAAEEQIA NGPDTCGGNE DADHGNRNNT IARCEAAEGA RGDGQDGGEG  720
ASEGPPRQKR QRNDQDYVWW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588740.0AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578953.10.0PREDICTED: uncharacterized protein LOC100833635
TrEMBLW5G0F90.0W5G0F9_WHEAT; Uncharacterized protein
STRINGMLOC_39233.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-10FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]